MmuEX6037916 @ mm9
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107861218-107861857:-
Coord C1 exon
chr8:107861752-107861857
Coord A exon
chr8:107861575-107861669
Coord C2 exon
chr8:107861218-107861329
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCCCATTTTCTGTCTCTAGCCC
3' ss Score
9.69
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAAGACAAGGACCTGGTGCCCGAATTCGTGCACTCGGAGGGTCTGAGTTGCCTGATCCGCGTGGGTGCTGCTGCAGACCACAACTACCAGAGCTACATCCTTCGAG
Seq A exon
CCCTGGGCCAGCTGATGCTGTTTGTGGATGGGATGCTGGGGGTGGTGGCCCACAGCGAGACCGTGCAGTGGCTGTATACCCTGTGTGCTAGCCTG
Seq C2 exon
TCCCGCTTGGTGGTAAAGACAGCCCTGAAGCTGCTGCTGGTGTTTGTGGAGTATTCCGAGAACAACGCGCCGCTGTTCATCCAGGCAGTCAACGCAGTAGCCAGTGCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'6-7,'6-5,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0636711=Drf_FH3=PU(7.5=21.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTCTGAGTTGCCTGATCC
R:
CACTGGCTACTGCGTTGACTG
Band lengths:
175-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: