MmuEX6043897 @ mm9
Exon Skipping
Gene
ENSMUSG00000031079 | Zfp300
Description
zinc finger protein 300 [Source:MGI Symbol;Acc:MGI:3045326]
Coordinates
chrX:20661034-20665706:-
Coord C1 exon
chrX:20665648-20665706
Coord A exon
chrX:20661342-20661468
Coord C2 exon
chrX:20661034-20661126
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATAAAAGTATGCAATTACAGGAA
3' ss Score
1.59
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
TTCTGCCTTTTTAGGCCTTTGGCTTCTCTCCACAACAGTCAGTCATGACTGAGTCCCAG
Seq A exon
GAATCAGTGTCATTTGAGGATGTGTCTGTGGACTTCACTCAGGAAGAATGGAATCAACTGGACCCTATTCAGAGGAGCCTATACAGAGATGTGATGCTAGAGAACTATAGTCATCTTGTCTCTCTGG
Seq C2 exon
GGTATCCTATTACCAAACCAGAAGTGATCGCCTCTTTAGAGAAAGGAGTCCTTGGGATAATAAAGAGAGAAATTCCAAGTTCAAGTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031079-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=87.2)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGGCTTCTCTCCACAA
R:
CTGTGCAACTTGAACTTGGAA
Band lengths:
138-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: