MmuEX6051176 @ mm9
Exon Skipping
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107227542-107235416:-
Coord C1 exon
chr10:107235378-107235416
Coord A exon
chr10:107231198-107231244
Coord C2 exon
chr10:107227542-107227719
Length
47 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCTTATGAATGCAGACA
3' ss Score
4.9
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GCATACCACTGTTTCCAACAGAACCAGCATTGCCACCAG
Seq A exon
ACATTACCCCATCAGACATGACACCGACCCCAGGTTTGGAATGCGAG
Seq C2 exon
CCTCAACAATTTGATCCTGTTTATAACTGTAGCCAATATATCTGCCTTAACATGGAGTGGACCTTCTACAACTGGTCTCTGAATTGCCCGAAGGACTTGGAAATGCCCGACTGTGGGTTCCGAGGCTGGCCTGTTCAAGTGAATACTGATATATGCTGTCCGGAGTGGGAATGCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'35-36,'35-35,36-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGAACCAGCATTGCCAC
R:
GTCGGGCATTTCCAAGTCCTT
Band lengths:
135-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: