MmuEX6055220 @ mm10
Exon Skipping
Gene
ENSMUSG00000068083 | Cyp2d40
Description
cytochrome P450, family 2, subfamily d, polypeptide 40 [Source:MGI Symbol;Acc:MGI:1919004]
Coordinates
chr15:82759835-82760939:-
Coord C1 exon
chr15:82760752-82760939
Coord A exon
chr15:82760185-82760326
Coord C2 exon
chr15:82759835-82760084
Length
142 bp
Sequences
Splice sites
3' ss Seq
CACCATGTGCCTCCTACCAGGGG
3' ss Score
8.51
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GCCGAGTGCAAGAGGAAATCGACGAGGTCATAGGGCAGGCACGGCGTCCAGAGATGGCAGACCAGGCCCGCATGCCCTACACCAATGCTGTCATTCATGAGGTGCAGCGCTTTGCTGACATCGCCCCAATGACTTTGCCACACAGGACTTCTTGTGACATTGAAGTGCAGGGCTTCCTTATCCCTAAG
Seq A exon
GGGACAACCCTCATCTGCAACCTGTCCTCCGTGCTGAAGGATGAGACTGTCTGGGAGAAGCCCCTCCGCTTCTATCCTGAACACTTCCTGGATGCCCAGGGCCACTTTGTGAAGCCTGAGGCCTTCATGCCATTCTCAGCAG
Seq C2 exon
GCCGTCGAGCATGTCTGGGTGAGCCCCTGGTCCGCATGGAGCTCTTCCTCTTCTTCACCTGCCTCCTGCAGCGCTTTAGCTTCTCAGTACCGGATGGACAGCCCCTTCCCAGTGATTATGGCATCTACTCAATGGTAGTTAGTCCAGCACCCTACCAGCTCTGTGCAGTGGTTCGCTAGAAGGGTCAGTGGTTCCAGTCTTCTCCCCAGTTTGGGCTTATTGATGTCCAATAAACAAGTTCTGTGTCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068083-'6-9,'6-7,7-9=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(22.4=100)
A:
PF0006717=p450=FE(17.0=100)
C2:
PF0006717=p450=PD(19.9=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGACGAGGTCATAGGGCA
R:
GTGTTCAGGATGGAAGCGGAG
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types