MmuEX6058243 @ mm9
Exon Skipping
Gene
ENSMUSG00000050954 | Zfp169
Description
zinc finger protein 169 [Source:MGI Symbol;Acc:MGI:1915161]
Coordinates
chr13:48593692-48602308:-
Coord C1 exon
chr13:48602276-48602308
Coord A exon
chr13:48594149-48594275
Coord C2 exon
chr13:48593692-48593787
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAATGTGTTTTTTGTTACAGGCA
3' ss Score
9.15
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGGCCCCAGGGCTCCTGACAACCAGAGACAAG
Seq A exon
GCATTAATGGCCTTCCATGACGTGGCTGTGGCCTTCAGCCAGATGGAGTGGGAGCTGCTGAGTCCTGCCCAGAGGATCCTGTACAGGGATGTAATGCTGGAGAACTATAGCCACCTTGTCTCCCTGG
Seq C2 exon
GAATTGCCTTTTCCAAACCAAAACTCATCACGCAGCTGGAACAAGGGGCAGAACCCTGGAGAGATGGCAGCGGATGCTTTCTGGACCTTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050954-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCCTGACAACCAGAGA
R:
AAAGGTCCAGAAAGCATCCGC
Band lengths:
114-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: