MmuEX6058925 @ mm9
Exon Skipping
Gene
ENSMUSG00000055228 | Zfp935
Description
zinc finger protein 935 [Source:MGI Symbol;Acc:MGI:1918758]
Coordinates
chr13:62558293-62567592:-
Coord C1 exon
chr13:62567586-62567592
Coord A exon
chr13:62566873-62566983
Coord C2 exon
chr13:62558293-62558419
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTATCTCTGCTAGGGAATAGCCT
3' ss Score
-4.89
5' ss Seq
AAAGCGCAT
5' ss Score
-10.23
Exon sequences
Seq C1 exon
GGAGTGG
Seq A exon
CCTGCAATTTTTCAAAATCACTCTCCTTTACCAATAACCAGACCAACACCAAATGGCTTCTCATCTCTCTCTTTTATAGAAGATTCTGATGCTAGGAGTATTTGCTCAAAA
Seq C2 exon
AATGCAGTGACTTATGAGGACGTGCATGTGAACTTCACTCAAGAGGAGTGGGCTCTGCTGGATCCTTCCCAGAAGAAGCTCTACAAAGATGTCATGGTGGAGACCTACAGGAACCTCAATGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055228-'1-2,'1-1,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: