MmuEX6059058 @ mm9
Exon Skipping
Gene
ENSMUSG00000071291 | Zfp58
Description
zinc finger protein 58 [Source:MGI Symbol;Acc:MGI:99205]
Coordinates
chr13:67594943-67621657:-
Coord C1 exon
chr13:67621562-67621657
Coord A exon
chr13:67595539-67595665
Coord C2 exon
chr13:67594943-67595038
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCCATTGATCTTCGTTTCAGGAA
3' ss Score
9.62
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCAGCAGCTGCCACCGTGCACCCAG
Seq A exon
GAAATGCTGTCATTCTGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAGAGAATGCCTGGAGCCTGATCAGTGGGATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCATCTGGATTTCCTGG
Seq C2 exon
GTCTTGCTCTCTCTAAGCCATTCCTGGTGACATTTCTGGAGCAAAGACAAGGGCCTTGGGACGTGAAGAGACAAGCAGCAGCCGCTGTGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071291-'2-12,'2-11,7-12=AN
Average complexity
A_C2
Mappability confidence:
89%=86=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF054957=zf-CHY=PU(1.4=3.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCATCCTGTAAGCCATACC
R:
GGCTGCTGCTTGTCTCTTCAC
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: