MmuEX6059069 @ mm9
Exon Skipping
Gene
ENSMUSG00000090659 | CT030194.1
Description
zinc finger protein 493 [Source:MGI Symbol;Acc:MGI:1920208]
Coordinates
chr13:67880630-67885426:+
Coord C1 exon
chr13:67880630-67880756
Coord A exon
chr13:67884727-67884853
Coord C2 exon
chr13:67885331-67885426
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTGATTTCATTTAATTTCAGAAA
3' ss Score
7.45
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATATGACGTCACAAGGAGCCAGTCAGGAAACCACGTTTCTACTCTCGGTCTGCATAGTTGCATCTTTCCCAAAGTTGAGCAAGAAAAAGGTCTTGCTCAGTACTCGGTTTGCATCTCTCACATGGAG
Seq A exon
AAACTGCTGTCATTCAGAGATGTGGCCATTGATTTCTCTGCAGAGGAGCGTGAATGTCTGGACTCTGCTCAGTGGAATTTGTATAAGGAAGTGATGTTGGAGAATTACAGCCACCTTGTGTTCCTGG
Seq C2 exon
GTCTTGCTTTCTCCAAGCCACACCTGATCACATTTCTGGAACGACGACCAGAGCCTTGGAATGTGAAGACACAGGCAAGTGTAGGCACATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090659-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=PU(25.0=15.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGTCACAAGGAGCCAGT
R:
GGTATGTGCCTACACTTGCCT
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: