MmuEX6064148 @ mm9
Exon Skipping
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20250190-20264604:-
Coord C1 exon
chr9:20264389-20264604
Coord A exon
chr9:20263991-20264105
Coord C2 exon
chr9:20250190-20250341
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACAAAATTTTTGCCTTCCAGAAA
3' ss Score
8.12
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ATCGAGAAGGCCGTTCTCGCTCAGAAATCTTGTTCAAACTTCAATTTCATTCTTTGACTGGGCTTTTAACCTCCGCTTCAGAATCAATCGGCATCCAATTCCGGGGAACCGAAATTTCAATTCCGGAAGGACTCGGACACGGTAAACGGAAGTGAACCGCAGCTCGCCTCCGTCTCTTCCGGTGTGGCTTCGTGCGGCCCCCTTCTCTTTTTCTCG
Seq A exon
AAAGAAGGATTTCGGCCGTTGGAATCTGTCTTCGCGCCCCATCGCTCCAGGAACCTGGCCATCCCGCTTCATTGTGAGCAGTGGGTGGAATTTGATGGAGCAGGAAAGTCCCAGG
Seq C2 exon
GAATTTAAGTCATCCAGATTAAGGAGAATGAATCTCGTCATTTTCCACTTTGATGCATAAGTTTCCCTGACGTGTCCTTGGAATCGCAGAAGAATTTGGTCACATATTTTACCATCAGACTAAAGAGATGGACTTGACTAGTTTGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-'1-4,'1-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTTTTAACCTCCGCTT
R:
CGATTCCAAGGACACGTCAGG
Band lengths:
245-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: