MmuEX6065153 @ mm10
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:42005806-42014574:-
Coord C1 exon
chr9:42014455-42014574
Coord A exon
chr9:42008179-42008304
Coord C2 exon
chr9:42005806-42005913
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGTCCTCTTTTTGTTGGCAGCCA
3' ss Score
7.43
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
Exon sequences
Seq C1 exon
AGATGCACCAGTGTCGTAGCGACGAGTTCAACTGCAGCTCTGGGATGTGCATCCGGTCCTCCTGGGTGTGCGATGGAGACAACGACTGTAGGGACTGGTCTGATGAAGCCAACTGTACTG
Seq A exon
CCATCTATCATACCTGTGAGGCCTCCAACTTCCAGTGCCACAATGGCCACTGCATCCCCCAGCGATGGGCATGTGACGGTGATGCGGATTGCCAGGATGGCTCTGACGAAGATCCCGTCAGCTGTG
Seq C2 exon
AGAAAAAGTGCAATGGATTCCACTGCCCAAACGGCACGTGCATCCCGTCCAGCAAGCATTGTGATGGGCTGAGGGACTGCCCCGACGGCTCCGATGAGCAGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'56-44,'56-43,58-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.2)
A:
PF0005713=Ldl_recept_a=PU(90.7=90.7),PF0005713=Ldl_recept_a=PU(7.7=7.0)
C2:
PF0005713=Ldl_recept_a=PD(7.0=8.1),PF0005713=Ldl_recept_a=PD(89.7=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCACCAGTGTCGTAGCG
R:
CACAGTGCTGCTCATCGGAG
Band lengths:
227-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types