MmuEX6065159 @ mm9
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:41799702-41804403:-
Coord C1 exon
chr9:41804254-41804403
Coord A exon
chr9:41800387-41800518
Coord C2 exon
chr9:41799702-41799828
Length
132 bp
Sequences
Splice sites
3' ss Seq
GGAGACTCTCTGTATTTCAGCCA
3' ss Score
3.63
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
CAAACTCCACTGCCGCCTCCACTCCCACCCAGTTCGGGCAGTGCGACCGATTTGAGTTCGAGTGTCACCAACCAAAGAAATGTATCCCCAACTGGAAGCGCTGTGACGGCCACCAAGATTGCCAAGACGGCCAGGATGAAGCCAACTGCC
Seq A exon
CCACTCACAGCACCTTGACCTGTACGAGCAGGGAGTTCAAGTGTGAGGACGGCGAGGCATGCATCGTGCTCTCGGAGCGCTGTGATGGCTTCCTGGATTGCTCTGATGAGAGCGATGAGAAGGCCTGCAGCG
Seq C2 exon
ATGAGTTAACTGTATACAAAGTGCAGAATCTCCAGTGGACAGCTGATTTCTCCGGAGATGTGACTTTGACCTGGATGCGGCCAAAGAAAATGCCATCTGCTTCTTGTGTATACAATGTCTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'37-35,'37-34,38-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=74.5)
A:
PF0005713=Ldl_recept_a=WD(100=84.4)
C2:
PF0004116=fn3=PU(46.8=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACTCCACTGCCGCCTC
R:
GCATTTTCTTTGGCCGCATCC
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: