MmuEX6076827 @ mm10
Exon Skipping
Gene
ENSMUSG00000090700 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:MGI Symbol;Acc:MGI:3645508]
Coordinates
chr17:32667816-32669895:+
Coord C1 exon
chr17:32667816-32667869
Coord A exon
chr17:32667954-32668081
Coord C2 exon
chr17:32669774-32669895
Length
128 bp
Sequences
Splice sites
3' ss Seq
ACCAATGGTCATCCTCATAGGGG
3' ss Score
6.07
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CTGCGGTTGCCCCAAAGGACGACATCTTCTACAGCTTCTTGAAACCCTGGCTCG
Seq A exon
GGGATGGGCTCTTGGTGAGTGCTGGTGACAAGTGGAACCGCCACCGACGCATGCTGACACCTGCCTTCCATTTCAACATCCTGAAACCCTATGTGAAGATTTTCAATGACAGCACCAACATCATGCAT
Seq C2 exon
GCCAAGTGGCTGCGCCTGGCCTCAGGGGGTAGCACCCGTCTGAACATGTTTGAGAACATCAGCCTCATGACCTTGGACACTTTGCAGAAATGCGTCTTCAGCTTCAACAGCAACTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090700-'1-14,'1-3,5-14=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.2=100)
A:
PF0006717=p450=FE(33.1=100)
C2:
PF0006717=p450=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCCAAAGGACGACATC
R:
TCCTGACAGTTGCTGTTGAAG
Band lengths:
171-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types