MmuEX6077343 @ mm9
Exon Skipping
Gene
ENSMUSG00000007041 | Clic1
Description
chloride intracellular channel 1 [Source:MGI Symbol;Acc:MGI:2148924]
Coordinates
chr17:35189380-35190084:+
Coord C1 exon
chr17:35189380-35189489
Coord A exon
chr17:35189726-35189851
Coord C2 exon
chr17:35189978-35190084
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACGTGTGACCTCTTCTCCAGACG
3' ss Score
7.52
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTGGCAGTGATGGTGCCAAGATTGGGAACTGCCCCTTCTCCCAGAGACTGTTCATGGTGCTCTGGCTCAAGGGAGTCACCTTCAACGTTACCACTGTGGACACCAAGAG
Seq A exon
ACGGACAGAGACTGTACAGAAGCTCTGCCCCGGTGGGCAGCTGCCGTTCTTGCTCTATGGCACCGAAGTGCACACAGACACCAACAAGATCGAGGAATTCCTGGAGGCCATGCTGTGCCCTCCCAG
Seq C2 exon
GTACCCAAAGCTGGCTGCCCTGAACCCTGAGTCCAACACCTCGGGACTGGACATATTTGCAAAGTTTTCTGCCTACATCAAGAACTCAAACCCAGCCCTCAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007041-'6-2,'6-1,7-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(40.3=78.4)
A:
PF134171=GST_N_3=FE(58.3=100)
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(5.6=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGATGGTGCCAAGATTG
R:
TGTCATTGAGGGCTGGGTTTG
Band lengths:
213-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: