MmuEX6077431 @ mm10
Exon Skipping
Gene
ENSMUSG00000024399 | Ltb
Description
lymphotoxin B [Source:MGI Symbol;Acc:MGI:104796]
Coordinates
chr17:35194439-35196302:+
Coord C1 exon
chr17:35194439-35194683
Coord A exon
chr17:35195050-35195365
Coord C2 exon
chr17:35195704-35196302
Length
316 bp
Sequences
Splice sites
3' ss Seq
AACCCTACCTACCCATCCAGGTT
3' ss Score
6.89
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GGCAGGTGTGTGGGTCTGCGGGGGTGGGGGGGTCTACCCCTGAGGTATGAAAGCCCCTGCCCCGGTCCTAGTTCTGAGTCTGGATGGGGACACGGGGACTGCAGGGCCTGGGTGGGAGACCCCAGGGGAGGGGCTGCCTCTTGCTGGCTGTGGCAGGAGCTACTTCCCTGGTGACCCTGTTGTTGGCAGTGCCTATCACTGTCCTGGCTGTGCTGGCCTTGGTGCCGCAGGATCAGGGACGTCGG
Seq A exon
GTTGAGAAGATCATTGGCTCAGGAGCACAGGCTCAGAAAAGACTGGATGACAGCAAACCGTCGTGCATCTTGCCCTCACCCTCTAGCCTCTCAGAGACTCCTGACCCCCGTCTGCATCCTCAGAGATCCAATGCTTCCAGGAATCTAGCCTCCACATCCCAGGGCCCTGTTGCGCAGTCCTCTCGGGAGGCATCTGCATGGATGACCATCCTGTCTCCAGCTGCGGATTCTACACCAGATCCAGGGGTTCAACAGCTGCCAAAGGGGGAACCAGAAACTGACCTCAACCCTGAGCTCCCTGCTGCCCACCTCATAG
Seq C2 exon
GCGCTTGGATGAGTGGGCAAGGGCTCAGCTGGGAGGCGAGCCAAGAAGAAGCGTTTCTGAGGAGCGGCGCGCAGTTCTCCCCCACCCACGGGCTGGCGCTGCCACAGGACGGCGTCTATTACCTCTACTGCCACGTCGGGTACAGGGGCAGGACGCCCCCTGCCGGCCGAAGCCGTGCTCGCTCGCTCACGCTGCGCAGCGCCCTGTACCGCGCGGGGGGCGCCTACGGGCGAGGTTCCCCCGAGTTGCTGCTGGAGGGCGCGGAGACAGTCACACCTGTTGTGGACCCCATCGGGTACGGGTCGTTATGGTACACGAGCGTGGGGTTCGGCGGCCTGGCGCAGCTCCGGAGCGGCGAGAGGGTCTACGTTAACATCAGTCACCCCGACATGGTGGACTACAGGAGAGGGAAGACCTTCTTCGGGGCGGTGATGGTGGGGTGACAGCCATCTGTATTCATTCCTGGAGGATCGACTGACGGTGCGAATGTGTGAATCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024399-'1-6,'1-1,2-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.857 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0022913=TNF=WD(100=93.2)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTATGAAAGCCCCTGC
R:
CCGACGTGGCAGTAGAGGTAA
Band lengths:
345-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types