MmuEX6077448 @ mm10
Exon Skipping
Gene
ENSMUSG00000073411 | H2-D1
Description
histocompatibility 2, D region locus 1 [Source:MGI Symbol;Acc:MGI:95896]
Coordinates
chr17:35262730-35264114:+
Coord C1 exon
chr17:35262730-35263186
Coord A exon
chr17:35263379-35263648
Coord C2 exon
chr17:35263839-35264114
Length
270 bp
Sequences
Splice sites
3' ss Seq
TCACCGCGCGCCGTCCCCAGGCC
3' ss Score
10.01
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AAGAGAAGAAGGAAGAGGAAGGGTGGAGGTTAGGAAACAGTGAGTCGGGCTTGTGGGTCTCTCCTGGTGATCTGACAGCTTCTGGGTCAGAACTCGGAGTCACCACGACAAACTGCTCTCTGTCCGCAGTACAGGGTTCAGGCAAAGTCTTGGTTGCCAGGCGGTGAGGTCAGGGGTGGGGAAGCCCAGGGCTGGGGATTCCCCATCTCCTCAGTTTCACTTCTGCACCTAACCTGGGTCAGGTCCTTCTGCCGGGACACTGATGACGCGCTGGCAGGTCTCACTATCATTGGGTGGCGAGATTCCAGGAGCCAATCAGCGTCGCCGCGGACGCTGGTTATAAAGTCCACGCAACCCGCGGGACTCAGACACCCGGGATCCCAGATGGGGGCGATGGCTCCGCGCACGCTGCTCCTGCTGCTGGCGGCCGCCCTGGCCCCGACTCAGACCCGCGCGG
Seq A exon
GCCCACACTCGATGCGGTATTTCGAGACCGCCGTGTCCCGGCCCGGCCTCGAGGAGCCCCGGTACATCTCTGTCGGCTATGTGGACAACAAGGAGTTCGTGCGCTTCGACAGCGACGCGGAGAATCCGAGATATGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAAACACAGAAAGCCAAGGGCCAAGAGCAGTGGTTCCGAGTGAGCCTGAGGAACCTGCTCGGCTACTACAACCAGAGCGCGGGCG
Seq C2 exon
GCTCTCACACACTCCAGCAGATGTCTGGCTGTGACTTGGGGTCGGACTGGCGCCTCCTCCGCGGGTACCTGCAGTTCGCCTATGAAGGCCGCGATTACATCGCCCTGAACGAAGACCTGAAAACGTGGACGGCGGCGGACATGGCGGCGCAGATCACCCGACGCAAGTGGGAGCAGAGTGGTGCTGCAGAGCATTACAAGGCCTACCTGGAGGGCGAGTGCGTGGAGTGGCTCCACAGATACCTGAAGAACGGGAACGCGACGCTGCTGCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073411-'3-7,'3-2,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.264 C2=0.022
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
PF0012913=MHC_I=PU(50.3=98.9)
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGATTCCAGGAGCCAATC
R:
CCGTCCACGTTTTCAGGTCTT
Band lengths:
293-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types