MmuEX6077452 @ mm9
Exon Skipping
Gene
ENSMUSG00000067235 | H2-Q10
Description
histocompatibility 2, Q region locus 10 [Source:MGI Symbol;Acc:MGI:95929]
Coordinates
chr17:35607771-35610534:+
Coord C1 exon
chr17:35607771-35608046
Coord A exon
chr17:35610028-35610303
Coord C2 exon
chr17:35610431-35610534
Length
276 bp
Sequences
Splice sites
3' ss Seq
TTCTTGAATCTTCCACACAGATC
3' ss Score
8.08
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTCTCACACGATCCAGTGGATGTATGGCTGTAAAGTGGGGTCCGACGGGCGCTTCCTCCGCGGGTACCTGCAATACGCATACGACGGCCGCGATTACATTGCCCTGAACGAAGACCTGAAAACGTGGACGGCAGCGGACGTGGCGGCGATTATCACCCGACGCAAGTGGGAGCAGGCTGGTGCTGCAGAGTATTACAGGGCCTACCTGGAGGCCGAGTGCGTGGAGTGGCTCCTCAGATACCTGGAGCTCGGGAAGGAGACGCTGCTGCGCACAG
Seq A exon
ATCCCCCAAAGACACATGTGACCCATCACCCAGGATCTGAAGGTGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAACTGGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGG
Seq C2 exon
AACCTCCTCCTTCCACTGACTCTATCATGTCACACATTGCTGATCTGCTGTGGCCATCATTAAAGCTCTGGTGGTATTTGTGATGAAGAGAAGGAGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067235-'2-4,'2-3,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.226 C2=0.031
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.2=94.6)
A:
PF0765410=C1-set=WD(100=90.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCACACGATCCAGTGGA
R:
GAGTCAGTGGAAGGAGGAGGT
Band lengths:
298-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: