MmuEX6078279 @ mm10
Exon Skipping
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 family C-terminal like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48464916-48539714:+
Coord C1 exon
chr17:48464916-48465029
Coord A exon
chr17:48522679-48522769
Coord C2 exon
chr17:48539437-48539714
Length
91 bp
Sequences
Splice sites
3' ss Seq
AATCCTTCCTCCCTCCCCAGAGA
3' ss Score
10.41
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCAGATGTTGTTGGAGCCCAACAGTGTCACTGGGAATGACTGGCGCAGACTGGCCTCCCACCTGGGTCTCTGTGGCATGAAAATCCG
Seq A exon
AGACCCTGTTGACTGACTGAGCTGGCTTGGCCACCCACCCTTGAACCAACGATCATCCTGTCTTGGTTTCCCAAGTGCTGGGATTACAGAT
Seq C2 exon
ACCCCGTGACTCGCATGACACCCCTGTACTCTTCTCTCGGAGACCCCGTGACTCGCCTGGCCCACAGAACACACTCAGCGAAGAGCTGCTGACTGAATAATCCTCCTGCCCCCGTGCGTCTCCTCCTCCGTAGTCGTCACTGACGGACTGTGGTGACATGCTTTAATTAGACTGGCATTAAAAATGGAGTCCTGATGAGTAAACACGCTAATACCGAAAGGAGGCGATGATTCAATAGCTTCCAGCCTCCCAAGTTTAATTAATGCTCCTGTGAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592-'11-23,'11-19,22-23=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(39.7=79.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAGCTGCAGATGTTGTT
R:
TTCGCTGAGTGTGTTCTGTGG
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types