MmuEX6078717 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57364276-57364733:-
Coord C1 exon
chr17:57364639-57364733
Coord A exon
chr17:57364458-57364540
Coord C2 exon
chr17:57364276-57364366
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATTCCTCATCTTCTTGCAGCAT
3' ss Score
9.23
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
ACCCCCGATGGCATTCCTGTCAAGAGAGACATTCTGTCTTCCAACAACCAACACGGCATCTTGCCTTTGTCTTGGAACATTCCTGAACTGGTCAA
Seq A exon
CATGGGGCAGTGGAAGATCCGAGCCTTTTACGAACATGCGCCGAAGCAGATCTTCTCCGCAGAGTTTGAGGTGAAGGAATACG
Seq C2 exon
TGCTGCCCAGTTTTGAGGTCCGGGTGGAGCCCACAGAGACATTTTATTACATCGATGACCCAAATGGCCTGGAAGTTTCCATCATAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(32.3=100)
A:
PF0183514=A2M_N=PD(25.0=82.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATGGCATTCCTGTCAAG
R:
AACTTCCAGGCCATTTGGGTC
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: