MmuEX6078759 @ mm10
Exon Skipping
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57236697-57237323:-
Coord C1 exon
chr17:57237206-57237323
Coord A exon
chr17:57236871-57237001
Coord C2 exon
chr17:57236697-57236740
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCACCCTGCCATCCCCACAGGTC
3' ss Score
10.79
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCTGAAGGGCGCCCTTCTCTTCATCACCATCGCCTTGATCGGCTCAGGCTGGGCCTTTGTGAAGTATATGCTGTCGGACAAGGAGAAGAAGATTTTTGGCATTGTGATTCCCCTGCAG
Seq A exon
GTCCTGGCTAATGTAGCATACATTGTTATTGAGTCCCGTGAGGAGGGTGCCAGCGACTATGGACTCTGGAAGGAGATCTTGTTCCTGGTGGATCTCATCTGCTGTGGTGCCATCCTTTTCCCGGTGGTCTG
Seq C2 exon
GTCCATTCGGCATCTGCAGGATGCATCCGGCACTGATGGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823-'22-22,'22-20,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(13.4=100)
A:
PF068148=Lung_7-TM_R=FE(14.8=100)
C2:
PF068148=Lung_7-TM_R=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCCCTTCTCTTCATCAC
R:
CTTCCCATCAGTGCCGGATG
Band lengths:
154-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types