MmuEX6083743 @ mm10
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5635028-5643850:+
Coord C1 exon
chr11:5635028-5635387
Coord A exon
chr11:5639100-5639185
Coord C2 exon
chr11:5643680-5643850
Length
86 bp
Sequences
Splice sites
3' ss Seq
GCCTCAAACTTTCACCAAAGGTT
3' ss Score
5.64
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
AATCCAGACCTCTCAAAGACGTGCCCACAAGCCCAGAGCGCACCTGCAGATCCAACCACGCTGATCCAGCCCCTGCCTGAGGAGGAGAGCAAGCAGACTCACCCCCCATCTTTGCGTCTCAAAAAAATGTCTGAAGATCTTGAAATAAACACGAAAGATGACAAAGAATGTGCACCAGGACATCCAGAAGTTCCTTCAGTGAAAGCGCATGGGAGAGAGTCTCTCACTGGAGACAGGAGAGGGCAGAACAGAGAGTCAAAGCAAAGCTGCCCTGAGCTGCAGCACACAGCCGCCGATGGGCTGGAAAGCATTTGTCCCGTGGAGGATCCACTTCCGGGTGGCTGTAGAAGTCACTTCAAG
Seq A exon
GTTGAAGAAGTAAGCAGGAAGCAGCAGAGTATGGACCTGGAAGTCTCAGAGCTGTCTCCTGCTGACGAGAAAGATGAACCTGCTAG
Seq C2 exon
GAGTGTTCCTGACTTGTGTATAAAAGACGCAAAGGGCAGTGAGAAGGAAGCATGGAGCCCCCGCGAGCCTGTGGTCACACCGGAATTTGAGAAGTCCCCTCCAGCAGGTGCTGATCTGCTACTACTGAAGGATGGTCACCTTCTCACTAAAATGGATCGGGTTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=1.000 C2=0.911
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGGCAGAACAGAGAGT
R:
TCACTGCCCTTTGCGTCTTTT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types