MmuEX6086678 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69265909-69266830:-
Coord C1 exon
chr11:69266663-69266830
Coord A exon
chr11:69266320-69266480
Coord C2 exon
chr11:69265909-69266048
Length
161 bp
Sequences
Splice sites
3' ss Seq
CCCTTCACTTGTTTGGCCAGATA
3' ss Score
6.91
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
Exon sequences
Seq C1 exon
TCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGTTGCTGGTGGGGATCGGGGGCAGCGGGAGGCAGAGTCTGGCCCGCTTGGCGTCTTCCATCTGCGATTATAACACGTTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACG
Seq A exon
ATATCAAGCGCTTGTATCGACAGGCAGGGGTAGAACTCCAGACCACGTCTTTCCTTTTCGTGGACACCCAGATAGCTGACGAATCCTTCCTGGAAGACATCAACAACATCCTTAGCTCGGGCGAAGTCCCCAATCTCTACAAGTCTGACGAATTTGAAGAG
Seq C2 exon
ATCCAGAACCATATCATAGACCAGGCCCGGGCAGAACAGATACCAGAATCCTCGGACAGCCTCTTTGCATACCTCATCGAGCGCGTGCGGAACAACCTGCACATTGTGCTCTGTCTAAGTCCCGTGGGAGACCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'66-61,'66-60,67-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(20.7=100)
A:
PF127802=AAA_8=FE(19.6=100)
C2:
PF127802=AAA_8=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGTTGCTGGTGGGGATC
R:
ACGGGACTTAGACAGAGCACA
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: