Special

MmuEX6089906 @ mm10

Exon Skipping

Gene
Description
glucose-6-phosphatase, catalytic [Source:MGI Symbol;Acc:MGI:95607]
Coordinates
chr11:101370706-101374705:+
Coord C1 exon
chr11:101370706-101370815
Coord A exon
chr11:101372702-101372807
Coord C2 exon
chr11:101374590-101374705
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTTCTTCCATGTAGGAA
3' ss Score
11.06
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GATTCTGTTTGGACAACGCCCGTATTGGTGGGTCCTGGACACCGACTACTACAGCAACAGCTCCGTGCCTATAATAAAGCAGTTCCCTGTCACCTGTGAGACCGGACCAG
Seq A exon
GAAGTCCCTCTGGCCATGCCATGGGCGCAGCAGGTGTATACTATGTTATGGTCACTTCTACTCTTGCTATCTTTCGAGGAAAGAAAAAGCCAACGTATGGATTCCG
Seq C2 exon
GTGTTTGAACGTCATCTTGTGGTTGGGATTCTGGGCTGTGCAGCTGAACGTCTGTCTGTCCCGGATCTACCTTGCTGCTCACTTTCCCCACCAGGTCGTGGCTGGAGTCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078650-'3-7,'3-3,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0156916=PAP2=FE(25.5=100)
A:
PF0156916=PAP2=FE(24.1=100)
C2:
PF0156916=PAP2=FE(26.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTGTTTGGACAACGCCC
R:
CTGACAAGACTCCAGCCACGA
Band lengths:
226-332
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types