MmuEX6095204 @ mm9
Exon Skipping
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115301274-115308630:-
Coord C1 exon
chr4:115308479-115308630
Coord A exon
chr4:115308237-115308343
Coord C2 exon
chr4:115301274-115301464
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACTTATGCTCTTGGTCCAGATC
3' ss Score
6.26
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
TGACAACAGCTACTACCTGGCAGTTAGTGACCTCACACTGCTGATGCAGCAGCGCATCGACTCCTTCCAGTACCATAATGACTTCATTTACTGGCTCACACCACATGGCCGCCGTTTCTTGCGGGCCTGCCAGATAGCCCATGACCATACAG
Seq A exon
ATCATGTCATCAGGCAGCGGAAGGCAGCTCTGCAGGATGAGAAGGAGCAGAAAAAGCTTCAGGAGCGGAGACACCTGGACTTCCTCGACATTCTCCTGGGTGCCCGG
Seq C2 exon
GATGAAAGTGGGATCAAGTTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATTCATGTTCGAAGGCCACGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTATCCTATGCACCAGCAGCGATGTAGGGAGGAGGTCCGTGAGATCCTAGGGGACCGGGACTCCTTCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713-'6-10,'6-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.201 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.2=100)
A:
PF0006717=p450=FE(10.7=100)
C2:
PF0006717=p450=FE(13.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCAGTTAGTGACCTCA
R:
GGGCCATGCAGTAGAGAAACC
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: