MmuEX6097706 @ mm9
Exon Skipping
Gene
ENSMUSG00000029451 | Gm13103
Description
predicted gene 13103 [Source:MGI Symbol;Acc:MGI:3650203]
Coordinates
chr4:143436400-143440893:+
Coord C1 exon
chr4:143436400-143436471
Coord A exon
chr4:143437539-143437618
Coord C2 exon
chr4:143440583-143440893
Length
80 bp
Sequences
Splice sites
3' ss Seq
GACTTTGAATATTTTTTAAGTGC
3' ss Score
3.91
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AGTCTCTTGGAGCTTGGAGTCACAACCTAACTCTGTCTGATTATGGTGATCTGTCAGCAGTGTCCAGATCAA
Seq A exon
TGCTTCTGGACCATTTGTGATTCCTCCTTGGTTGAATAAGGGGAAGATTTAGAGAAGCTGAAGAGGAGGATGACCCCAAA
Seq C2 exon
GATGACTCTTCAGAAGAAGAAACAATTGATGTCTACTCCCCACCCACCCTGCTGAAGCTGGCAATACACAGGCTACTGAGAGAGGAGGCTTTAGCCATTTCTTCTCTCAAGGACCTGCCCAATATGCTGTTCCCAGTGTTGTTTGAGGAGGCCTTCATTTTTGGTTATACAAAGATCTTGAAGGCCATGATACCTGAGTGGCCCTTTTCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAACCTGGAGAGTTTGAAGGCTGTTCTTGAGGGACTAGATATACTTCTTGCACAAAAGCTTCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029451-'0-2,'0-0,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCTGTCAGCAGTGTCCA
R:
GCCTCCTCAAACAACACTGGG
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: