MmuEX6097785 @ mm9
Exon Skipping
Gene
ENSMUSG00000056300 | Gm13247
Description
predicted gene 13247 [Source:MGI Symbol;Acc:MGI:3700965]
Coordinates
chr4:145658647-145665969:-
Coord C1 exon
chr4:145665886-145665969
Coord A exon
chr4:145662492-145662618
Coord C2 exon
chr4:145658647-145661262
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAAGAAGTTTTCTGTTACAGGAT
3' ss Score
6.53
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AAGAATTTGAATGTTTGCTCCTCACCAAGAATCTGGGAGAAGAACAACTAAAGAATGAGTGCCTCTCTGGTAAACCCTCCACAG
Seq A exon
GATCTGTTAACCTTCAACGATGTGGCTTTGAACTTTTCATTGGAGGAATGGGAATGTCTCAATTTTGCTCAGAGGACATTGTACATGGAAGTAATGTTGGAGAATTACAACAATGTGTTATTTGTGG
Seq C2 exon
AAAATCAATGCATCTGTGGAAAAAATGAGTCGTTCTTGGATCAAGACATACAGCACATTGTCAATGAGCATGGGCATATCCGAAAGAAGTCTTCTAAATGTAATGAGCTTAGTAATGTGATTCATGAATCCTCCGAAAGTACACCTTATAACACTAACCAAAGAGATGCCACATTCCAATTCTCAAACCTAAAAAGACATAAAACTGGGACCACTAAAGAAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGTCTTCTATCATTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACACAACAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAAACATAAACCCATTGTGAGACAAAACAATAGTGAAATGAACACTTACACTTGTGGTGAATTTGACAAATGCTTTACTCAGAGTGACAGTCTTCAAAGTCAGCAGAGAAAGCCAGGAAAGAAATCTTACAAATATAGTGAAAGTGACAAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056300-'15-17,'15-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCACCAAGAATCTGGG
R:
TGGAATGTGGCATCTCTTTGGT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: