MmuEX6099110 @ mm9
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17384294-17449951:-
Coord C1 exon
chr2:17449697-17449951
Coord A exon
chr2:17447677-17447757
Coord C2 exon
chr2:17384294-17384483
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTAATTCATCATAGGTG
3' ss Score
8.36
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TAGCATAGAAGTTTATTTCTGAAAGAACTAAGCAACTCTTCTTAAGACCACCATGTGATGGATAACAGGAGGATTATAGCTCACTCAGAGGTAAGCCTTTTCATTTATGTTCAAATTAAGTCAGTGTTCATAAGTAATCAGAAAATAACTCACCTTCTCACGAAACTTTATCATTAGCAGGAGTATACTTTATATTCAATGCCAGAGGTCGTTTGCAGATCCATTCTTAACTATGCCAAACCCCTTATAACGCAG
Seq A exon
GTGGAAGGAAGGTATCACGTGAAGAGGAAAGAGAAAGAAAGCAATGAGAGAATGCCAGGCTTTCTGAGATGGATGGAAATG
Seq C2 exon
CCCAGCGAAGAACCATTAAGAACTCACAGCAAGATTGAAGATGAGAAGAAATCCTGCTTAAGCCTCAGGCACGCCATTCACTATGGAAACAGACATCACCCAAAGCAACATGAGCATTGTCATCTGAAGTGGAAGCTAAGAGGTTCATCTTGGACAGCGTTGGGATATTTTTTCCTATGTACTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702-'5-7,'5-5,6-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.281
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGTCGTTTGCAGATCC
R:
TGCTCATGTTGCTTTGGGTGA
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: