MmuEX6100043 @ mm9
Exon Skipping
Gene
ENSMUSG00000026805 | Barhl1
Description
BarH-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1859288]
Coordinates
chr2:28770734-28772188:-
Coord C1 exon
chr2:28772038-28772188
Coord A exon
chr2:28771830-28771867
Coord C2 exon
chr2:28770734-28771527
Length
38 bp
Sequences
Splice sites
3' ss Seq
CGATTTTTTTTTTTTTAAAGGAA
3' ss Score
8.84
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATCGCCGGTAAATAGTTAGGTCTGTGCTGTAATTAATTCAGTGTCTCTTTTAATCAAACTGGAAAAGAATCGGGCCGCGGGTTGTAGAGACGTGACATCACCCCCAAAATCGGCCCGAACCAATCAGCGTCATCACTCCGGGGACACGTGG
Seq A exon
GAAGTGGGGGTGGCGGCGAAGGCGCGCGCGGAGGACAG
Seq C2 exon
GGATCCTCGGGCCGTTCTTCTACCCTTTGGCTCTCCCCAACTTGGCGCGCCCTCCTCCCATTCCTCCTGACACTCCCACCACCACCCCCCCTCGGCTCGGCGGCTCGGCGCGGTGCTGCAGAAGACGCGTTGAGCCCTTTTGGATGTAATGCGCAGAGGAGGTTGGCCCAGAGCTCCCGGGCTCCCCCAAGGCTGAACTCCGTCCAAGGTGCCCACAGGCTCCCTGCCCGCCTTCCCCATGCCAGCCCGCAGCTAGGGGCAGGGGCAGCGGCGGCTGGGGTTGGGGGTGGGTGGGGAGCTTTTGGGGAGGACAGGTTGCAGCTTGGCTATGGAAGGCTCTAATGGCTTTGGGATTGACTCCATTCTCTCCCACCGAGCGGGCAGCCCCGCCCTTCCCAAGGGGGACCCCTTGCTTGGGGACTGCCGTTCACCCCTGGAGCTGAGTCCACGCTCAGAGAGCAGTAGCGACTGCTCTTCACCAGCCTCGCCCGGAAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026805-'3-3,'3-2,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.801
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACCAATCAGCGTCATCA
R:
GGAGTGTCAGGAGGAATGGGA
Band lengths:
113-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: