MmuEX6100383 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31392962-31396144:+
Coord C1 exon
chr2:31392962-31393138
Coord A exon
chr2:31394689-31394846
Coord C2 exon
chr2:31396021-31396144
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCCTTGCCACCACTTTTCAGTGC
3' ss Score
6.91
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACGTCTCCTGGTTCAAGGGTCGCCAGCCCATCTCTACCCAGAGACGGGTGATAGTGTCAGCTGATGGAAGAGTTCTTCATATTGAGCGAGTCCAGCTTTCTGATGCAGGGAGCTACCGCTGTGTGGCGACCAATGTGGCGGGCAGTGCAGGGCTGAAGTATGGCCTACGGGTCAATG
Seq A exon
TGCCACCCCGAATTACCCTGCCACCCAACCTACCAGGCCCAGTACTGCTTGGCACACCCTTCCGCCTGACCTGTAATGCCACTGGCACCCCCCGCCCCACCCTGATATGGCTGAAGGATGGAAACCCTGTGTCTCCTGAAGGAATCCCTGGCCTCAAG
Seq C2 exon
GTCTTCCCCGGAGGACAGGTCCTCACTGTGGCCAGTGCCCGTGCCTCTGATTCGGGCAGCTACTCCTGTGTAGCAGTGAGTGCTGTGGGTGAGGATCGCCGGGATGTCATCCTGCAAGTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(64.8=95.0)
A:
PF0767911=I-set=PU(54.9=94.3)
C2:
PF0767911=I-set=PD(42.9=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTCCTGGTTCAAGGGTC
R:
GGAGTAGCTGCCCGAATCAGA
Band lengths:
243-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types