MmuEX6100741 @ mm10
Exon Skipping
Gene
ENSMUSG00000026869 | Psmd5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:MGI Symbol;Acc:MGI:1914248]
Coordinates
chr2:34857638-34863566:-
Coord C1 exon
chr2:34863457-34863566
Coord A exon
chr2:34860632-34860774
Coord C2 exon
chr2:34857638-34857829
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCTTTTTGACTTTAGAGC
3' ss Score
8.94
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTAATTATAGATATTTCTTCTGTGTCATCAGAATCTTTAAACTACTGTACCACAAGTGGACTGGTGACTCAACTCCTAAAAGAGCTGACGGGTGAGGACGTGTTAGTCAG
Seq A exon
AGCCACCTGTATAGAAATGGTGACATCACTAGCTTATACCCATCACGGACGACAATACCTTGCTCAAGAAGGAGTCATTGACCAGATATCCAATATAATTGTTGGCGCAGATTCAGACCCTTTCTCTGGCTTCTATCTGCCAG
Seq C2 exon
GATTTGTGAAGTTTTTTGGAAACCTGGCCGTCATGGATAGTCCTCAGCAGATCTGTGAGCGCTACCCTGTTTTTCTGGAGAAGGTGTTTGAAATGGCGGATAGTCAAGACCCCACCATGATTGGTGTCGCTGTCGACACAGTTGGAATCCTGGGATCCAGTGTTGAAGGAAAACAAGTTTTACAGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026869-'11-14,'11-12,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(7.1=100)
A:
PF105084=Proteasom_PSMB=FE(9.5=100)
C2:
PF105084=Proteasom_PSMB=PU(30.9=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGGTGACTCAACTCCT
R:
TGTCTTCTGTAAAACTTGTTTTCCT
Band lengths:
245-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types