MmuEX6101013 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41960641-42653624:-
Coord C1 exon
chr2:42652735-42653624
Coord A exon
chr2:42323594-42323716
Coord C2 exon
chr2:41960641-41960778
Length
123 bp
Sequences
Splice sites
3' ss Seq
CAAAACATTTTCTTTTTCAGATC
3' ss Score
10.8
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTTGCAGCGATCTTATTTACGGCTGTTTCCCTATCATGTTAACTGCCGCTTACTAGTAGTAGATCTGATTTCTGTGGGCAACAGAGGAGAGTGCGGAGGACTCGGTGATTAATAGTGAATTCCCATCGGCGGGCATCTCTCTGCCCCTCTTGCGTGATGTAAGATCAGACGTACCCTGCATCGAAAAGTCCAGACACACAGAGCCTGGCTGGCGCTCGCACGCTCTCCGCAGGCGCGCTTTCGCTCACCTTCCACATCCTGCTCCTGGCAGAGCAAGGCGGACTGGCTGGACCCACCGACCAGGGATTTCCAGTGACATTTGTAAATGACGCGGCTCCGTTCCAGGCTGCCAGCCGCCGCGGCCCGGCCGAGGGTGCCGCCGAACAGTCTGCAGCACAGGCTCACCGGGAAGATCATCATGTCCCAGTTGCTCCTTGCCATCCTTACTCTCTCGGGATTATTGCCTAACGCTGAGGTGCTGATTGTGGGAGCCAACCAAG
Seq A exon
ATCAGCATTTGTGTGACCCTGGCGAATTTCTTTGCCACGACCATGTGACTTGTGTCTCCCAGAGTTGGCTGTGCGATGGAGACCCTGACTGCCCTGACCAGTCAGATGAGTCTTTAGATACCT
Seq C2 exon
GTCCCGAGGAGGTGGAGATCAAGTGCCCCTTGAATCACATTGCTTGCCATGGCTCTAGCGCATGTGTCCATTTGTCAAAACTGTGCAACGGAGTGGTCGATTGCCCAGATGGCTTTGATGAAGGAGGGCATTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'0-8,'0-3,6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005713=Ldl_recept_a=WD(100=95.2)
C2:
PF0005713=Ldl_recept_a=PD(0.1=0.0),PF0005713=Ldl_recept_a=WD(100=83.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCAGGGATTTCCAGTGAC
R:
AGCCATGGCAAGCAATGTGAT
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types