MmuEX6101457 @ mm9
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59914927-59963754:-
Coord C1 exon
chr2:59963520-59963754
Coord A exon
chr2:59917339-59917478
Coord C2 exon
chr2:59914927-59914968
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTATTTATTGTATTGATTAGAGA
3' ss Score
4.25
5' ss Seq
ATGGTAGTC
5' ss Score
0.63
Exon sequences
Seq C1 exon
ATCTCCTGCTTCAATCTGCTGCTGGATAGGAACTAATCAGAGAGCGAGCGGCGGAAGACGGGGACGGAGGGAGCCAGGGCTTTCGCGATCACGGATCTCACCTCCACTCCAACTCCCTAGACTTTCTGGCAGGAATTAGAAGAGAAATAAGGAGGCGGTGGGGATTCCGAAAAGCTTAACCCGCACCCGGGAAGGGCGAAAATCCCTTCCCCCGCAACTCAGTTCGAAAGTGAAG
Seq A exon
AGAGAGAGATTGCATGATGTTCTCAGGGTACAGAGGAAGGCTGTCTGTGGGAGGACAGAGAGGAGTAACCAACACCAGCTTCATTCATCGCCCACCTCAGAATGGAGACAAACATGGACACCTGAAATTTGTTTCAAATG
Seq C2 exon
GTTTCCCAACAGTGATGTCACAAGATTGACCACACTGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'9-12,'9-11,14-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCAATCTGCTGCTGGA
R:
TCTTGTGACATCACTGTTGGGA
Band lengths:
255-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: