MmuEX6102044 @ mm9
Exon Skipping
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70359130-70361149:+
Coord C1 exon
chr2:70359130-70359165
Coord A exon
chr2:70360537-70360564
Coord C2 exon
chr2:70361101-70361149
Length
28 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTCTTTGTTTTTCAGCAA
3' ss Score
10.11
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCTTAGCCCTGAATTTTGTATTCCTGAAATTCCCAG
Seq A exon
CAACTACCTGGACAAGACTGATGTGCAG
Seq C2 exon
GCATCAAAAAGCAGACAGAATGGCAGATTGCTATTGTATGATCCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-'5-5,'5-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGAATTTTGTATTCCTGA
R:
CTTCGGATCATACAATAGCAATCTGC
Band lengths:
80-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: