MmuEX7000634 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181716183-181725553:+
Coord C1 exon
chr1:181716183-181716320
Coord A exon
chr1:181720098-181720268
Coord C2 exon
chr1:181725386-181725553
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTTACCTTTTGGTCTCTCAGCTT
3' ss Score
6.77
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGTATTCAGGATCTCTCTCTAATCGCTGCTTATACCTCTTCTGTCAGTGGGAAGGAGATCAGCCCCCGTCTCCTCAAACACTTCTCCACGCTGGTGTTGCCTCATCCTCCACAGAGTGCCCTATGTACGGTATTTCAG
Seq A exon
CTTCTGCTAGGATTGATGCAGGCAGATAAGAACATAATTAACTCCAAAGAGATGGCAGCTCTGCTCCTAGTTCACGAAGCCAGCCGCGTGTTTCATGATCGTTTGACTGATCAAAGCGAGAAAAGCCTTTTCTACCAGATTCTGTCAACAGAACTCCAGAATCATCTACAG
Seq C2 exon
ATTTACTGGAGTCACGAGAGACTGATGAACAAGCCAGTCCTATTTGTGGACTTCATGGATATAAACAAGCCTCACCGGAAAAGGGTCTACCAGAACACCGATAACTACAATGAACTTTTGAGCATCCTTACCAAATTCCAACAGAAGTTGAGTTCATCATCTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'54-70,'54-63,63-70=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(19.7=100)
A:
PF127752=AAA_7=PD(10.2=43.9)
C2:
PF127752=AAA_7=PD(3.1=12.5),PF127802=AAA_8=PU(0.7=3.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTCTGTCAGTGGGAAGGA
R:
TGTTGGAATTTGGTAAGGATGCTCA
Band lengths:
247-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types