MmuEX7000636 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181706740-181709119:+
Coord C1 exon
chr1:181706740-181706801
Coord A exon
chr1:181707486-181707667
Coord C2 exon
chr1:181708991-181709119
Length
182 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTTGGCATCATAGAGC
3' ss Score
5.4
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
CCTCAGGCAGAATATCAACATCTTGATTGGTGATCCCACCAAAATAATTGGAGCAGGCCTTG
Seq A exon
AGCAGAGTGCAAAGAAAGAAGAGGCTAAAGCTAATGACAGCACTGTTATAAATGATAAAGGAATTATAGTCTCCACAATAAATTTTACCAGCACCATGACAGCCGCCAAAACCAAGGAGCTGCTTCTGCGGAAGTTAGTAAGAAGAACCAAAGACATTCTGGGAGCACCAAAGAACAACAGA
Seq C2 exon
ATTGTCGTATTTATTGATGACTTGAATATGCCGATAGTAGACGCATGTGGAACACAGCCACCCCTGGAGTTGATCAGACAGTTATTAGATATGGGAGGTGTTTATGACACTGAAAGGAACATGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'52-60,'52-59,59-60=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(6.1=63.6)
A:
PF127752=AAA_7=FE(26.2=100)
C2:
PF127752=AAA_7=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGCAGAATATCAACATCT
R:
TCCACATGTTCCTTTCAGTGTCA
Band lengths:
189-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types