MmuEX7000658 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181598364-181601219:+
Coord C1 exon
chr1:181598364-181598479
Coord A exon
chr1:181598904-181598966
Coord C2 exon
chr1:181601081-181601219
Length
63 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTTTTTCTTTTCAGGCT
3' ss Score
10.71
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATCACTAAAACAGGCCTCAACATGGAGGATGTGGAGCTTATGCCTACGATGGACTGGCTCTATGAAAGACATTACTTCTACTTACTGCAGAAGTTTAAGATATTTTACAACTTCCG
Seq A exon
GCTAAATAAAGCCTTTGTTACTTGGAAACTGAATGTTAAAAGACGTAAGACAGAGACTAGCAG
Seq C2 exon
ATCATACCTGTACAACCATCTTTTTTGTGCTGATGAGTTATTTCAAACTTCTTTGCTTTATGTGAGAGGACTCTGTGAAGATGCCCTCACTCTCAAAAAGAAAAATAAAGACAATTCGTCCACCATCTGCCTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'1-11,'1-7,9-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACGATGGACTGGCTCTA
R:
GAGTCCTCTCACATAAAGCAAAGA
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types