MmuEX7000661 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181584974-181593556:+
Coord C1 exon
chr1:181584974-181585095
Coord A exon
chr1:181590440-181590583
Coord C2 exon
chr1:181593429-181593556
Length
144 bp
Sequences
Splice sites
3' ss Seq
CACAATGTTTTTCTTCACAGGTT
3' ss Score
10.48
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
ACGTTCAATACATAAAGGCCGACAGTGCATACATGGCAGATCAGCTATGGCTGTGGGGAAGAAAATACCCTCCGAGTCCTCAAGTTCAGAGGGGACGGAAGATGACCAAGATTACCGTCCAG
Seq A exon
GTTATCTTGAACAAAAGTTCAGTCCACAATGTGTAGGGGTTTCAAAACCATTTTTCCCCGATATAAGGAATGCAAAAGTGAAGCCGGAGCAGACTGCCCATACAACCAGGAAGAGGTCCCGAATTCAGCCGTATGACAGAGCAG
Seq C2 exon
AACCAGAAGAGGCTGACGCCATAAAACATATTTTTAGGCTTAGAGAAAAGCTTGGATGGGAAACTCCATCATTTCTTCGCTCTCTGAAGTACCACCCTAAGACTGTGCTTCCAAGGTGCAGCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'1-13,'1-2,4-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.522 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTCAATACATAAAGGCCGACA
R:
CTGCACCTTGGAAGCACAGTC
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types