MmuEX7000952 @ mm10
Exon Skipping
Gene
ENSMUSG00000034780 | B3galt1
Description
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1349403]
Coordinates
chr2:67981743-68118150:+
Coord C1 exon
chr2:67981743-67981790
Coord A exon
chr2:68073449-68073573
Coord C2 exon
chr2:68117713-68118150
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGGTGTCTACTTAGGAT
3' ss Score
9.79
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAAAGAAGAAATGGGTTTCCACGGACCTATCAATGATACTCATCACAG
Seq A exon
GATTCTGCAATTTGGTGTGCATCAGCTTTTGGAGTGAGCCTCTCAAATCTCTACAGACCAATGGAGACTAAGCAAGATGCTCTGTAGCTGAACTAAGAAGAAAGGCAGCAAGTTTGGCCCAAAAG
Seq C2 exon
AGTTCTGGGGAAGATTTCTGAGGCATGGAGCTTCCAGCAGGTTTGGAAGAAAGTAAAGTGAATTCCATGATGCAACAACACAAGTGAGGTCTGTGGACACCCACCAAACCAACTCCTCTCTGGCAGGAATTTTAGATTGACGAATACTATGCTGCCTTTGCAAAAGGACAAGAAACTAGTGCCCAAAAGACGTGTTCTTCAGCATTTGGATTAGACGTGTTCTCAAGACAATGGCTTCAAAGGTCTCCTGCCTCTATGTATTGACCGTTGTGTGCTGGGCCAGCGCTCTCTGGTACTTGAGCATAACCAGACCTACTTCATCCTACACTGGCTCCAAGCCGTTCAGTCACCTAACAGTTGCCAGGAAAAACTTCACCTTTGGCAACATAAGAACTCGACCTATAAACCCACATTCTTTTGAATTTCTGATAAATGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034780-'17-26,'17-22,25-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0176216=Galactosyl_T=WD(100=58.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTTCCACGGACCTATCA
R:
TCCAAATGCTGAAGAACACGTCT
Band lengths:
247-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types