MmuEX7003861 @ mm10
Exon Skipping
Gene
ENSMUSG00000109344 | A26c2
Description
ANKRD26-like family C, member 2 [Source:MGI Symbol;Acc:MGI:3644757]
Coordinates
chr7:62820636-62823673:-
Coord C1 exon
chr7:62823303-62823673
Coord A exon
chr7:62820954-62821068
Coord C2 exon
chr7:62820636-62820809
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATTGCTTCTCATTCCCACAGAAC
3' ss Score
10.77
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
GGTCAGAGTTTATCACTTCTGGGATTCCCAGAGTTGGATTCTGACTGTTAGAAGTTCAGTGATTAAAAGTTTATATTTCTTAAAATTATTTAATTCTGAGCTGACGCAAAGGTGACCACAGAGATGTTCTCCACCTTTAAGAAGCTCTGCTGCTGTAAGAGAGAGCCGAAAACCCCTTTGGGGTTTTGTGATGGCCCAAGCACCTGTAAGTGGAGCTTGGCGTGTTGTGACTGTAGTCAAGACAGGTATGGCCAGTCTTATGATCCAGATAATAAATTCCATGAAGCAGTGTGCATGGGAAAGATTAAAGTGGTGCTGCATCTCCTCTCTAAGAAGAAATTTACCATAAATGACCAGGACAAAGGAAAACG
Seq A exon
AACTGCACTGCACTTCGCATGTTTTTATGGTCATCTGCATCTGGTTCAATTCTTATTATATAATGACTGCATGATAAATGCCCTTGATGATCAAAAGGCCACACCATTAATGAAG
Seq C2 exon
GCTGTACAAAGCTGGGAGACAAAGATTGTTTCTGTCCTCCTTGATAATGGAGCAGATCCCAATTGTAAAGATTTCAATGGAGAAACAGCACTACATCAGGCGGTATATGTTAACAGTCCAGATATTGCCACCTGTCTTCTTGAATATGGAGCAGAAATTGAAGAAACTACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109344-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=37.3)
A:
PF127962=Ank_2=FE(40.4=100)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTGTTGTGACTGTAGTC
R:
CCGCCTGATGTAGTGCTGTTT
Band lengths:
257-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types