MmuEX7004299 @ mm10
Exon Skipping
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:131267475-131270635:+
Coord C1 exon
chr7:131267475-131267516
Coord A exon
chr7:131268846-131269160
Coord C2 exon
chr7:131270591-131270635
Length
315 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTTGGCTTCTGCAGATC
3' ss Score
9.61
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CTACTTCAGCTCCTGAGGAACATCTAAGTGATTTGCATCCAG
Seq A exon
ATCTGCCGCTGGTGAGACTGTCTGACGGGAGGAGCCAGTGTGAGGGCCGTGTAGAAGTCTACTTCAATGGGACCTGGGGGACTGTGTGTGATGATCTTTGGGGCATACAGGCCGCCCAAGTGGTATGTCAACAACTGGGCTGTGGGGTGGCCCTGGCAGCCCCCAGGAGCAGTCTGTTTGGCGATGGCTCTGGCCCCATCTTCCTAGACGACATGAGATGCTTGGGCACAGAGACCAACCTGGGGCAGTGCCACCACCCCGGCCTTTCTGTGCACAACTGTGAGCACCATGAGGATGCAGGCGCCATCTGTTCAG
Seq C2 exon
CTCCTGGTGTTGTCTCTGCTCCAGCAGGAGTGGCTCCGACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204-'45-57,'45-56,53-57=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types