MmuEX7033844 @ mm10
Exon Skipping
Gene
ENSMUSG00000039747 | Orai2
Description
ORAI calcium release-activated calcium modulator 2 [Source:MGI Symbol;Acc:MGI:2443195]
Coordinates
chr5:136161487-136168474:-
Coord C1 exon
chr5:136168366-136168474
Coord A exon
chr5:136167825-136167887
Coord C2 exon
chr5:136161487-136161724
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCACCTCATCCTACATGAGCTG
3' ss Score
-7.17
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCAACCATCCTGCCCCATTCTCTGGAGGATGAGCGCCTTCCTGCACATGACTTCAGCTTCCTGCTTCTCAGAACCCTCTCTGTGGGCCACATCTTGTCTTGGATAAAGG
Seq A exon
CTGATCCTGGAAACCTGACTGGAGCAACAAGGGAATGAAGAAGGGAGAGACACACAGACACAG
Seq C2 exon
CCTGGTCCCCACCATGAGTGCAGAGCTCAATGTGCCCATGGACCCCTCTGCCCCTGCCTGCCCTGAACCCGGCCACAAGGGCATGGATTACCGAGACTGGGTCCGGCGCAGCTACCTGGAACTCGTCACGTCTAACCACCATTCGGTGCAGGCACTGTCCTGGAGGAAGCTCTACCTGAGCAGGGCCAAGCTGAAAGCCTCCAGCCGGACCTCAGCCCTCCTGTCTGGCTTCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039747-'2-8,'2-3,3-8=AN
Average complexity
A_S
Mappability confidence:
91%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.139
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF078567=Orai-1=PU(18.2=45.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGGGCCACATCTTGTC
R:
GGACCCAGTCTCGGTAATCCA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types