MmuEX7034408 @ mm10
Exon Skipping
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67304324-67306005:+
Coord C1 exon
chr11:67304324-67304527
Coord A exon
chr11:67305622-67305747
Coord C2 exon
chr11:67305835-67306005
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCCACCATTTTTTTTAACAGAAC
3' ss Score
9.2
5' ss Seq
GATGTGAGC
5' ss Score
4.72
Exon sequences
Seq C1 exon
GACACCCAGCTGCATCTGGATGACGCTCTCCGGGGCCAGGAGGATCTGAAGGAGCAGCTGGCCATCGTGGAGCGCAGAGCCAACCTGCTGCAGGCTGAGATTGAGGAGCTGCGGGCCACGCTGGAGCAGACGGAGAGGAGCAGGAAGATTGCAGAGCAGGAGCTGCTGGACGCCAGTGAGCGCGTGCAGCTCCTCCACACCCAG
Seq A exon
AACACGAGCCTCATCAACACCAAGAAGAAGCTGGAAAATGATGTTTCACAGCTGCAGAGTGAAGTGGAAGAAGTGATTCAAGAGTCACGCAATGCAGAAGAGAAGGCTAAGAAAGCCATTACTGAT
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAGAACATGGAACAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-'29-41,'29-37,40-41=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.786 C2=0.789
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
PF0157614=Myosin_tail_1=FE(4.8=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATCTGAAGGAGCAGCT
R:
CCTTCACCGTCTGTTCCATGT
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types