MmuEX7034638 @ mm10
Exon Skipping
Gene
ENSMUSG00000073409 | H2-Q6
Description
histocompatibility 2, Q region locus 6 [Source:MGI Symbol;Acc:MGI:95935]
Coordinates
chr17:35425571-35428382:+
Coord C1 exon
chr17:35425571-35425846
Coord A exon
chr17:35427864-35428139
Coord C2 exon
chr17:35428267-35428382
Length
276 bp
Sequences
Splice sites
3' ss Seq
TTCTTGAATCTTCCAAACAGATC
3' ss Score
8.71
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTCTCACACACTCCAGTGGATGTATGGCTGTGACGTGGGGTCCGACGAGCGCCTCCTCCGCGGGTACCTGCAGTTCGCCTATGAAGGCCGCGATTACATCGCCCTGAACGAAGACCTGAAAACCTGGACGGCGGCGGACATGGCTGCACAGATCACCCTACACAAGTGGGAGCAGGCTGGTATTGCAGAGAGAGACCGGGCCTACCTGGAGGGCGCTTGCGTGCAGTCGCTCCGCAGATACCTGCAGCTCCGGAAGGAGACGCTGCTGTGCACAG
Seq A exon
ATCCCCCAAAGGCACATGTGACCCATCACCCCAGGTCTTATGGTGCTGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACTTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGAACCATGAGGGGCTGCCTGAGCCTCTCACCCTGAGATGGG
Seq C2 exon
AGCCTCCTCCATCCACTGTCTCCAACATGGCGAACGTAGCTATTCTGGTTGTCCTTGTAGCTTGGCCATCATTGGAGCTGTGGTGGATTTTGTGATGAAGAGAAGGAGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073409-'3-12,'3-5,10-12=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.2=94.6)
A:
PF0765410=C1-set=WD(100=89.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTATGGCTGTGACGTGGG
R:
GTTCGCCATGTTGGAGACAGT
Band lengths:
292-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types