MmuEX7034687 @ mm10
Exon Skipping
Gene
ENSMUSG00000032808 | Cyp2c38
Description
cytochrome P450, family 2, subfamily c, polypeptide 38 [Source:MGI Symbol;Acc:MGI:1306819]
Coordinates
chr19:39404661-39438374:-
Coord C1 exon
chr19:39438214-39438374
Coord A exon
chr19:39436054-39436230
Coord C2 exon
chr19:39404661-39404802
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCCTGATCTGATTTTACAGGTC
3' ss Score
10.52
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG
Seq A exon
GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG
Seq C2 exon
GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032808-'1-17,'1-6,8-17=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCTTGTGACCCCAC
R:
GTTGTCTCTGTTCCTGCAGCA
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types