MmuINT0000783 @ mm9
Intron Retention
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30656434-30657227:-
Coord C1 exon
chr2:30656660-30657227
Coord A exon
chr2:30656522-30656659
Coord C2 exon
chr2:30656434-30656521
Length
138 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGG
5' ss Score
4.23
3' ss Seq
CTCCTGTTGTCCCCACCCAGCAC
3' ss Score
6.21
Exon sequences
Seq C1 exon
CACAGCAGGCTAGGGTCCTGCCGGAGTCGGCTTCTGCTGCCCCTTCCCGGCGCTATGGACTGCGGGCTGGAATACGACCTTCCTGCGGCCCCGCTCGCCCCTGCGCGTCCCCCGGGCGCGAAGGTGTCCTGAGCCGAGCTCTGACTCAGGATGTTCCGGCGCCAGTCCATGGAGGGGACCCCGGCCTACAAGCCCAAGGGATATCCCGACGGGACCACCCAGCGCCGCCCTGTTAAGCGGCTGCCGATGCTGCTGCCAATGCTCGAAGGCCGTGTGGGGCGAGATGTAGACGGCGCGTGGCGGCGGGACCGCAAGTCCCAGCGCCTGCCTTGCGGGTCCCCCGAGTCCCCGAACGCTCGGCGAGACCGTGGGACCGCGCGCGCACTGCTACTGCCGTCGCTGCAGCCGAGCAGCTCGGCCCGGGAGGCGGGAACTCGGGGGAACCGGCAGCCTGCAGCCCGCGACAACCCTGACTCCCTGGGCACGCTGCTGGGGAAGCTGCTGCCCAACAAGTTCCGCCACTTCCTGCACCACCTGAGCGCCGAGAGCGCAGACCCAGAGGCGGACC
Seq A exon
GTGAGGCCGGGGGGATGGGGTGGGGAGTGGGTGTGTGTGCGCGGAGTCTGGGGTTCCCAAGCGAGGACTGTCTCCATCTCAACGGGCTCTCCTCCTCCCCCTTCTCCTTTCCTTCCTCCTCCTGTTGTCCCCACCCAG
Seq C2 exon
CACCCTCAGCGCCACATAACCCTAGGAGTACATCAAATCACTGCCTAGCTTCTCGGTCTTCCAGCTGCTTATTCCTCCCAGACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320-1700001O22Rik:NM_198000:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.896 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCTACTGCCGTCGC
R:
ACCGAGAAGCTAGGCAGTGAT
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: