MmuINT0003453 @ mm9
Intron Retention
Gene
ENSMUSG00000043183 | 4732471D19Rik
Description
RIKEN cDNA 4732471D19 gene [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54648338-54648700:+
Coord C1 exon
chr13:54648338-54648494
Coord A exon
chr13:54648495-54648615
Coord C2 exon
chr13:54648616-54648700
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TGCTTTTACTGTCTCTGCAGTCA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GGAGATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGATGCAAAGTCCTGGAGATCATATTCCTGCACAGCTGTGAGACACCCACCCGTCTCCCCTTGTCTCTGGCCCAGACCCTCTATTTTCTGAACAACTCCACGTCCCTGCTCAAGTGTCAA
Seq A exon
GTATGTTCCTTCCTGCTTCAGAACACTCCTGATCCTGCTGTTTGGGCATCATGAGGGAGATTGGGAAACTATACTTAAATGGGACTCATTGATCTTCCCGCTGCTTTTACTGTCTCTGCAG
Seq C2 exon
TCAGATAAAACGCAGTGGCAGACATGGGATGAGCTGGTTGAACATCTGCAGTTCCTGCTGTCCAGTTATCAACACGTGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183-4732471D19Rik:NM_176987:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGTTCTTTACTACCATGGA
R:
CTCTCAGCACGTGTTGATAACTG
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: