MmuINT0003721 @ mm9
Intron Retention
Gene
ENSMUSG00000026940 | 4921530D09Rik
Description
RIKEN cDNA 4921530D09 gene [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25472052-25472627:-
Coord C1 exon
chr2:25472506-25472627
Coord A exon
chr2:25472130-25472505
Coord C2 exon
chr2:25472052-25472129
Length
376 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
3' ss Seq
CAGCCGCCGCCGCTCCACAGCAT
3' ss Score
4.65
Exon sequences
Seq C1 exon
AACAATGTCGGGCACTCCAGATCCAGGGTGTGAAGGAGAAGACAGCACAGAACAAAGCTACAATGGGAATCCTGCGCAGCAACCTCCGCCGAGGAGCCCAAGACTGGGCTTTGGCTAAGAAG
Seq A exon
GTGCAAAAGCCCGCCCCGCCCCCGCCCCCCCCCCCCCACCTCGCAGCCTGAGATTAGGTGGTGGCTACTTATGCACACACCCTACCCATCTCTCTGGACCAGAGGGCCTGAAGGGGTGGGTTCCTCTGTAACAGGTGCCCAGGGCAGGTTCCCCAACACCCACACAGTGTGCTTAGCGCCAACAGCAGAGACTCTTTGCGGACCCCATCACACCAGAGCAGGGATGAGCCTGGAGGGGTCCTGCGCGGTCTGCTCAGGGGTCCCAGGACCAACGGTCTCCTTGCTGGGCTAGCGGCGAGTAAGAGGCACTGGGGGATATGCCTGAGCAATCAGTGCCAGGGGCCAGACTCCAAGCTCAGCCGCCGCCGCTCCACAG
Seq C2 exon
CATGATCAATGGACCATCTCCAAGGCCTGCGGAAAGGATACGTCCATGAGGCTGGCACACGGCCGCAGTACTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-4921530D09Rik:NM_029859:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTCGGGCACTCCAGATC
R:
CTCCAAAGTACTGCGGCCG
Band lengths:
198-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: