MmuINT0003804 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:113648379-113649653:+
Coord C1 exon
chr8:113648379-113648512
Coord A exon
chr8:113648513-113649504
Coord C2 exon
chr8:113649505-113649653
Length
992 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
ACCTCAACCTTGCCTTGCAGTCC
3' ss Score
8.68
Exon sequences
Seq C1 exon
ACCTTCTTGCATTAGAACAGAGCAAGACTTTCTACAAGCCAGATTGGTTTGATATTGTGGAGTCAGAAGTCAAATGCTGCAAGGAAGCTGTGTGTGTCATTGACATGTCCTCTTTCACAAAATTTGAAATAACT
Seq A exon
GTAAGTATTAAAGTTTGGGGAAACATTTTCTACTTATTGAGTGTTTTCTTTCATGTATTTTCATGTTTTTAATTATATACATATAGTTATTTTGCTTCAATGTATGCCTGTTGACCGTGTGCATGCAGTACCTGAGGAAGCCAGCCAGAAGGCAGCCTTGGCTTCCCCTGGGACTGGAGTTATAAATGGCTGTGGGCTGCCATGCGGGTGCTTGGGAATTGACCAAACAGCCAGTGCTCTTAACCAAGGAGCCACCTCTTCAGCCCCCAAAATGTTTGTTTTGATCTCCCCCTCCCCTCCCCTTCCCTCTCCTCCCCTCCCCTCCCTCCCCTCCCCTCCCCTTCCCTTCCCTTCCCCTCCCTTCTCTTCTCTTCTCTTTCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCCAATTCAGAGATCCACCTGCCTCTGCCTTCTAAGTGCTGACATTAAAGGCGTGCACCGCCAGCCCAGCAAAGACTTGCTTGTGTATGAGTGTTTTGTCTGCATATATATCTGCATACCAGAAGAGGACACTGGATCTCATGAGACTCTAGTTTTAGGTGGCTGTGAGCCACCCTGTGGTTGCTAAGATTGAACTCAAGATTTCTTTCTGGACGTGTAGCCAGTTTTCTTGACCACGGAGACACCTCTCTAGCTCCCAAATGCCCATTTTTCACTTATTACCTCAAAACTGATTCTGGAAGAACTCTACACTATTTTAGTGTTTCAACTGTATAATCACATTTTTCTGAAGTTTAGCTCCTGTAGCAGTTTTTAATTAACTTGGTAAGACATGTTTATCATAAGTACTGATGGTTAGATTTCCTTGTGGCTTACAGGAAAGTAAGCCTGCAAATGGTGCCATGTAGGTTGTATCTTTGAGTTCCCTCAGTCGGGCAGTGCGGTCAGGTGCTCCTGTGTTCACTGTCCCCACCTCAACCTTGCCTTGCAG
Seq C2 exon
TCCACTGGGGACGAGGCGTTAGAAAGTCTGCAGTACCTTTTCTGCAATGACCTTGATGTACCTGTAGGCCACATCGTTCATACTGGCATGCTCAATGAATATGGAGGATACGAAAACGACTGCAGCATCGCACGCCTGACCAAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
-4930402E16Rik:NM_198308:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTTGCATTAGAACAGAGCA
R:
TTTGGTCAGGCGTGCGATG
Band lengths:
278-1270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: