MmuINT0003805 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:113649505-113650228:+
Coord C1 exon
chr8:113649505-113649653
Coord A exon
chr8:113649654-113650115
Coord C2 exon
chr8:113650116-113650228
Length
462 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTGGGGTTTTCATTTTCAGTTT
3' ss Score
9.24
Exon sequences
Seq C1 exon
TCCACTGGGGACGAGGCGTTAGAAAGTCTGCAGTACCTTTTCTGCAATGACCTTGATGTACCTGTAGGCCACATCGTTCATACTGGCATGCTCAATGAATATGGAGGATACGAAAACGACTGCAGCATCGCACGCCTGACCAAACGCAG
Seq A exon
GTGAGCTGAGCTGCCATGCCCTTCTCCTTCCACTAAACTGATACTTCACGGGCTCTGGATGTTGAACAATTAGTACTTCTCTAGGAGGCCACAGTCCTAGGAGCCCAGAAACGATTTCATAAACTCCTGTCTAAATCACTAGTCACCTGTAAACAAATCAGCAAAGGCCAATAAAGAGAAGAAACCCAGGGTGGGTTGGTGGCTCATACTTATAATGTCAGGAATGTGAAGGTTTAACACAAGTTTGGGGCCAATCTGGGCTACATGAGAAGTTCCAGGCCAGCTTGGCCTATGAAGTGAGACTCACTCTGCTTAAAAGATAAGAACAGAATAAGTTGTACTATGTATAACTGTACACTGGGTGTAGTCACCCTAATGGGAAAGGATTCTTTAGAAATGTTACTAAATCTGTGTAAATTTTCTGCCTTTTGGTTTTGATTATTTTGGGGTTTTCATTTTCAG
Seq C2 exon
TTTCTTTATGATTTCTCCAACCGATCAGCAGGTCCACTGTTGGGCCTGGCTTAACAAATACTTGCCGAAAGACAGCAACTTGCTGCTGGAGGACGTCACCTGGAAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
-4930402E16Rik:NM_198308:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGAGGCGTTAGAAAGTC
R:
TGTGTATTTCCAGGTGACGTCC
Band lengths:
254-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: