MmuINT0003821 @ mm10
Intron Retention
Gene
ENSMUSG00000079421 | 4930402F06Rik
Description
RIKEN cDNA 4930402F06 gene [Source:MGI Symbol;Acc:MGI:1922104]
Coordinates
chr2:35380383-35385669:-
Coord C1 exon
chr2:35385619-35385669
Coord A exon
chr2:35380527-35385618
Coord C2 exon
chr2:35380383-35380526
Length
5092 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGA
5' ss Score
7.45
3' ss Seq
TGTCTTTCTTACAAATACAGAAT
3' ss Score
6.4
Exon sequences
Seq C1 exon
GTCTCTGAAAAACCAACCAGAACTCCAGCCCTCAGACTGGTTTAACGCCAC
Seq A exon
GTAAGAAAGCCCGTCTTGCATCTGTGAGGTTAATTCACAAATGTTGACAGATGGGATCAGTGCCACTGTTGGAAGTGTGTGCCTGGAGCCAAGGAGGCCAGAGCAGGGCACTGCATCTCCTGGAACTGGGGTTACAGAGGGCAATGAGCCACTAGTGTGGGTGCTGGGAACTGGACAGCTTCTCTGTTAGAGCAGCAAGTGCTCTTAACCACGGAGCCATCTCCCCAGTCCCAACTTTAAGCAATCTTGCTACTTAAAACTTGATCAGTGGAAGTGGGTGGGTAGGGGAGCAGGGTGGGGGGAGGGTATAGGGAAACTTTCAGGATATCATTTGAAATGTAAATAAAATATCTAATTAAAAAAAACTTGATCTATAACCGTTTGCATCACCTGAAATAGACACATCTGCTATTGTATATATGAAACACACATATATATAAAGTAATATTCCTGTTTATGGTCATTAATCCTGCTTCCTAAGCTTGTAAGCAGTCTAAATCTTTTTTTTTTTTTCTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCTGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTGAGTCTAAATCTTTTTAAAAGATTCAAATATTATATCAAAAGTGAAAACTAACATATAAAAATGTTCTGAGTTGATTATCCCTAACTTCCTGGCATTTTATATCCCTCCAGTGTATAGGGCTACTGAAACGTAAAGCTTAAGGAGTCAGGATTCTGTCACTCAAAATAAAATTGTTAATAATAATAATAATAATAATAATAACAGCCTATTTCAGGCCCAATATGTTTCTAATTGTATTTTGATCATCATTCTGAGCATAGACAATTATATGTGCCCAAGCACTTTGCATTCCAAGCCCCTCCAGTAATGATTTGGATTAAGGTCACTAGAAAATTTCATTCTAAGTGTGAAGATAGGACTAAACCAGAGGAAGGTTTCATCCCCAGGACAAAGAGCTTATATATAGCGCTCATCCTGAGCATAGGGGTAAATCTGCACATGAGCATTCCTTGGCTTTCCTTTCATGTCTTCTACTTAACTGTAAGTGCATACTTACATAATGCTCTGGCCTGCTGCCTTCTTACCTTCTCCTTCCTAATATATATACTTATATATTAGTAAATTATATTTATGTAATTATGGAATTCAATATGCATATATATTCAACAATAATTGGGGACCAGCAGGACCCAGGTACCCAGGAACTCCACCAGACCAGTGGCATGGGTTCCTTCGGGTCTGGGCGGTTGCCCTGAGCAGACCTTGGGCACAAACTCCACAGTCAGTCCCACAACACCCAAAGGAAGCTCCACTCCCAGGAGCTCTAACACACCCAGGATCATAGGATCAGAGGTGCCCTAAGCAGACCTTGGGTACTAACTCTGCAGCCAGTCCCATAACACCCAGAAGAAGCTCCACTCCCAGGTACTCCAACACACCCAGGACCCCGGGATCCCAGGATCCCAGTATCTTAGGAGCTTGGTCACACCAGGATCTCAGGGTCCCAGAATCCAAGGATCATAGAGACAGCTGAACTCTGAGGAGTTCTGACACAACCAGGATCACTGGAAGGACAGGATCCAGTCAGATATAGTGAGGGCAGGTAGCACTAGAAATAATCAGATGGTGGGAGGCAAGCATAAGAACATAAGCAACAGAAACCAAGGTTACTTGGCATCATCAGAACCCAATTCTCCCACCATAGCAAGTCCTGGATACACCATCATACCAGAAAAGCAAGATTTGGATCTAAATCACTTCTCATGATGATGATGATAGAGGAATTTAAGAAGGACATAAATAACTTCCTTAAAGAAATACAGGCGAACACAGGTAAACAGGTAGAAGCACTCAAAGAGAAAACACAAAAATCCCTTAAAGAATTACAGGAAACATAATCAAACATGTGAAGGAAATGAATAAAACCATTCAAGATCTAAAAATAGAAATAGAAACAATAAAGAAATGTCAAAGGGAGACAACCTTAGAGTTAGAAAACCTAGGAAAGAGATCAGGAGTCATAGACACACACATCACCAACAGAATACAAGAGATAGAAGAGAGAATCTTAGGTGCAGAACATAGAAAACACTGACACAACAGTCAAAGAAAATGAAAAAAGCAAAAAGCTCCTAAACCAAAACATCCAAGAAATCCAGGACACAATGAGAACAACAAACCTAAGGATACTAGGTATAGAAGAGAGTGAAGATTTCCAACTCAAAGGGCCAGTAAATATCTTTCAACAAAATTATAGAAGAAAACTTCCCAAACTTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCTGTCACATAATAATCAAAACACCAAATGCACTAAAAAAGAAAGAATCTTAAAAGCAGTAAGGGAAAAAGGTCAAATAACATATAAAGGCAGACCTATCAGAATTACACCAGACTTCTCACCAAAGACTATGAAACCTAGAAGATCCAGGGCAGATGTCATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACCATATCCAGCAAAACTCTCAATTACCATAGACGGAGAAAACAAGATATTCCATGACAAAACCAGATTTACACAATATATTTCCAAAAATCCAGCCCTACAAAAGATAATAGATGGAAAACACCAACACAAGGAGGGAAACTACACCCTTGAAAAATCAAGAAAGTAATCTTTTGAAAAACCCAAAAGAAGATATCTGCACAAACATAATTCCACCTCTAACAACCAAAATAACAATCACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCCCATAAAGACATAGACTAACAGACTGGATATGCAAACAGGACCTAGCATTTTGCTAGGAAACCCACCTCAGGGACAAAGACAGACACTACCTCAGAGTCAAAGGTTGGAAAACAATTTTCCAAGCAAATGATCCCAAGAAACAAGCTGGAGAAGTCATTCTAATATCGAATAAAAACTTTCAACCAAAATTTATCACAAAAGATAAGGAAAGACACTTCATACTGGTCAAAGGAAAAATCTACCAAGATGAACTCTCATTTCTGAACATCTAAGCTCCAAATGCAAGGGCACCCACATTCATGAAAGAAACTTTACTAACGCTCAAAGCACACACTGCACTCCACACAGTAATAGTGGGAGACTTTAACACCCTACTCTCAGCAATAACGGATAATGGAAACAGAAACTGAACAGAGACACAGTGAAACTAACAGCAGTTATGAACCAAATAGATCTAACAGATATTTATAGAACATTTCATCCTAAAGCAAAAGAATATACCTCCTTCTCAGAACCGAATGGTACCTTCTCCAAAACTGACCGAATAATTGGTCACAAAATAGACCTCAACAGATATAAGAAGATTGAAATAATGCCACACACTCTATCAGATCACCATGGACCAAGGCTGGTCTTAAATACCAACAAAAACAATGGAAAGCCCCCACACACATGGAAGCTGAACAATGCTCTACTCAAAGATAACTTGATCAAGAAAGAAACAAAGAAATTAAAGGCTTCTTAGAATTTAATGAAGATGAAGGCACATCATACCAAAACTTATGGGACACAATAAAAGCAGTGGTAAGAGGAAAACTCATAGCTCTAATTGCCTCCAAAAGAAACTTGAAGAGAGCTCACACTAGCACTTGACAGCACACCTGAAAGCTCTAGAACAAAAAGAAGCAAATACACCCAAGAGGAGTAGACAGCAGGAAATGATCAAACTCAGGTCTGAAATCAACCAAACAGAAACAGATATACAAAGAATCAACAAAACTAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGTTAAACCCTTAACCAGACTAACCAGAGGACACAGAGACAGTAACCAAACTATTAAGATCAGAAATGAAAAGGGAGAGATAACAATGAAATATATCTTAAAATAATTATTCTGCTTGTTGAATATGAACAGTTGAAAATATTAAAATCATGTTCTACAAACAAACAAACAAATTAATAACAAAAAGAGGCCATGAGTTTGAAAGAAAGTAAGGAGAGGAATATGGAAGTATATAGAGGGAGAATGATAATGAAGTAATTATAGTCTCAAAAGGGAAGAAATAACAACATCTTGTATTTTACAGATATAGATATATATATATATGTATTTGTATATATTTTCCCATATATATTAGGAAAGGACATTATATAATATAATAATGTATTATGTATGATATAATAATTATTATATAATTGCATATAATATATTATATATTATATAACAATGCTACATATTATATAATGTACATACACATTATATAATACTTATACATGTTACATATAATACATAAACTACATGCTATATATTAATTTTATATTATAAATTATATTATATTTTATATAATTACATTATCATTTCCTAATACATATGGAATTATATATAATTTAAATTATATGCATATGTGGGGATGTGTAGTTGTACACATGAATGGAGTGACCTACTAGAGAAGGTTGTGAGCCACCCCAGAACTGGAAAGTAAACTGTGGTTCTCTGCAAGAGCGGCATACACTCTTAATGGTGGGACCATCTCTTTAGTCCTTTCCTTTCTTTCCTTCCTTTTCTCATTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGGAGATCTAGTTTCAATCTATACCCCATGCTGACCTTGAACTCACAACTGTCTCACGCTCCTGATGATCTGATGTGGCCCTTTCTGACGTTACGCTTCCCTTGCTTCTCAGAACTGTTAAGACTTGGGGTTGATGTAATGGGATGCTGCCTTCAGATGCAAGGTATTAAGCATCATCAGCCCCCCCCCCCACACCCCCGCCGATGTTTTAGGATTATCTATTTCACTCTAAAATTCTGTCTTTCTTACAAATACAG
Seq C2 exon
AATGGACTCAACACACATGGGCATGAGAGCTACTAACTGGTCCGCTCCGATTGTGTGGACCAACACTTACAATGAGTTAGTCTTGGCAAGTTATTATAAGAAGCATCCAGTTACCGTGGGGTTGATCGTGTTTGCAGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079421:ENSMUST00000113010:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.7=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types