MmuINT0003958 @ mm9
Intron Retention
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127284364-127287088:+
Coord C1 exon
chr3:127284364-127284487
Coord A exon
chr3:127284488-127286501
Coord C2 exon
chr3:127286502-127287088
Length
2014 bp
Sequences
Splice sites
5' ss Seq
CTGGTGACC
5' ss Score
2.02
3' ss Seq
AGCACTATGTTTTCTTTCAGGAT
3' ss Score
9.45
Exon sequences
Seq C1 exon
GTGATTTCTCCAGAACAAAAGATCCCTGCATTGAGCCCTGCACCTACTTTTTCTTTCAACACAAGAAATGAAGACACTGTGCTTGAGCTCTCTGAGGAGTCTCTGAAAACAAGAACTCTCCCTG
Seq A exon
GTGACCTTCACTTTCTCAGCCATTATCTGTGAGAGTGTGCTGGGCTATGGATGGCAGGGAACCCGCTGTCTCTTCCCTTGGACTTTTTCTGTCCTGGATGCTTTCCCAAGTGCACCTCTTCTAGTTGTTGCTTCCTTCTCAGCTGTCTGTCTCTTCACTGCCTCTGAAAGGGTCCCTACCTACCTTCCCGTCCGCTGTCAGTACTTCTGGTTGACCTTGTGTAACCTTTTCATCGCTGCTGTGGGCAGCTGGCAGTGTCAGGAACTGCTCAGTGACTGCTCTCCTCCAGCCTCCTCTCAGGCCATTTGGACTTTTCTGCTTCTTGAAAAGTATTTTATTCAATAGAATCTCTTCCCACTAACTGCTGTTTTCTGATAGTTTCATTGATGTATTTTTTTTTCTTAATCTGAAGTTAGGTTTGGTGATTGATGTTTTCTTGGTTGTGAGTGGATGATTAATATAAAAAAAGAAATAAGCCGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAGGACAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAGAAATAATTTAATGTAAATCAGTAGTTGAACTAGAGATGGCTTAATGGTTGTGTCTGATTGAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAAGAAAAGGGGGCAGGGTAGGAGGAGATGTGAATGGGGTGGGTATGAGGTGGGGTTCTTGTAATCCCAGCACTCAAGAGACAAGGCAGGCGGATCAGTACTTGAAGCCTAGCTTGGACTACCTGGGGCAAGGGAGGGGAGTGTATAGAAGAGCATCCTCTGAACGCAGTCAAGCGGTAGTGGAGTGGAAGGGGTTTTCACAGGGATGGGTCTTAGCTCTGTAATAGAGTTTTATTTCTGTCACCGTTTCTTTTTTTGTTTTGTTTTTTGTTTTGGTTTGATTTGGTTTAGTTTGGTTTTTTTTTGTTTGTTTGTTTGTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCATTGCCTGCTTCTGTCACCGTTTCTTAATTCAGTTTTGGATTATCCCCTAATACTTCAACAAAGAATATTCTTTGGCTCACTGCTATACTACCCAAGTGATCATCAAAATTTATTTCCTATGAAATAGACTGTGTCAACTATTAAAGAATCTGTAATATTTTTAGATAAAACTTTAATAATGTATTAAATCCTATGCAGTTTTAATGATTCATTAATGTATTTCTGCTTTTTACCTTTTTAGCAATTTCTCTGTTCCAATAGCTGCTGATAGAAAGGAGGAATTATAAAACTCATTTAGACAAAAGCTCACAAAAAGTGGTAATTTTACAAATAAAGCTAAAAATCTTTTGTCGTGAAAGATAAAATTCATAAATCACATTTTAAGTGAGCTCTGGGTTTTGCAGAAGGAATGTGAATAGATATGAATTCACTCTGTGGTTTCTTTGACTGACACTTGGTACAAACTGCACTCTAGACCTCTGTTACCTCATCTGTAAAATGGGGATGATACAGCTTTTCTCAGATTTAAATGCTTTGAATGTTCTATAAATATAATTGAGTTATTAAAGATACTTAGCTCAATAAAAGGAAAGAGAAGGACTTATATTTGTTAGCTTCATAAGAGTCTTCAAATCTATAAATTAAAATTTGAATCTTTAGATTTTGATATTAAAGCATTTACTTTGTGAGGGAGCTAGAGACTTACATTATTTTCTATTTTACACAGAAAGTCGGAACTGTCCGCTCTTGCCTGTACCCACTGCTTTCGAGAGCCTGGTGATGATTGGTGGAACATTTGTATTAACTCAGCACTATGTTTTCTTTCAG
Seq C2 exon
GATTGAAAACCATTGGTTTCCAGGACAGTAAGAACCTCCAACGGTTTCCGTTTCTAAGTGGAGCCTCAGCTCCCTTTGCCACTTTGCCAGCTGATGATGGCCCAGCTGTCTTAGATCCCTGTTCATTCATGATTGATGATGACGCGCGAGAGCCTTCTGGTTCTTCCATGTTGAACCTGTGTGAAGAGTCAGGTCTTTCATTCGACCTTGGACTTGAGGGCCAGGGTGGGACTCCAGGAGGTGTTTCACTGCTTCCTAAGAGTTCTACTCAAAGCAAGTGGCTGAAATATCAAAACCCACCCCAGTGCAACTCAACTGCTCCGAACAGACTTGCCAGCGAGGTGACCGAGGGTCTCTTTGCTGAAGCGGTGTCTGGCTTGCATTTTAGCCACACAAGTGAGAGTGAAAGTTCTGTTGACCCTGTGCGCCTGCAGATGATAAAAGGCTTGCTCCATCAACAGCAGCAGGATTTGGTTTCCAGAAAGCAAGCTTTTTCTCTGACTTTAAATCAGACTTGCAAGACTCAGGAACATGAGACTGTGTTAGGAAGCTCTGCCAGCAAGAACTGCAGAGCCAAAGATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-4930422G04Rik:NM_197997:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: